What should I do if 'Cool On' or 'Heat On' is flashing on the display?

The compressor protection feature is engaged to prevent damage from restarting too soon after shutdown. Wait 5 minutes for the system to restart safely, without damage to the compressor. The flashing message will stop and the compressor will turn on once the safe wait time has elapsed.

From the official Honeywell T6 Pro Thermostat manual, page 8

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